AG Rehli

Mononuclear Phagocyte Biology &
Epigenetics of Cell Differentiation

Useful Links

+ Databases, Molecular Biology, Genetics, DNA/Protein-Analysis

National Library of Medicine
PubMed, Genes, Short Read Archive (SRA), BLAST

UCSC Genome Browser with alternative european site here
IGV - The Integrative Genomics Viewer
WashU Epigenome Browser

ENCODE - Encyclopedia of DNA Elements
Roadmap - Epigenomics Project
IGSR - International genome sample resource (1000 genomes data)
ICGC - International Cancer Genome Consortium
IHEC - International Human Epigenome Consortium
FANTOM Consortium
Sanger Centre
MGI - Mouse Genome Informatics
Human Cell Atlas - Single cell reference data
Single Cell Expression Atlas - Single cell gene expression across species

BioGPS - Reference data base for gene expression
Gene Skyline - RNA-seq data base of ImmGen

GEO - Gene expression/molecular abundance repository
ArrayExpress - Archive of functional genomics data
EGA - European archive for genetic data (controlled access)
GHGA - The German Human Genome-Phenome Archive (controlled access)
NFDI4Health - National Research Data Infrastructure for Personal Health Data
deNBI - German Network for Bioinformatics Infrastructure

MethPrimer2 - Primer Design For Bisulfite Modified DNA
PerlPrimer - Application For Primer Design
Benchling - R&D cloud (Rehli_lab)

JASPAR - Database For transcription factor binding profiles
Metascape - Up2date functional gene annotation
Enrichr - Gene set enrichment analysis
G.R.E.A.T - Functional annotation for non-coding regions
STRING - Functional protein association networks

ExPASy - Bioinformatics Resource Portal
EMBL-EBI - Comprehensive molecular data resources

ATCC - American Type Culture Collection
DSMZ - German Collection of Microorganisms and Cell Cultures

+ Bioinformatics, Data Management

HOMER - Software for motif discovery and next generation sequencing analysis
Bioconductor - Open source software repository (R language)

Conda - Package, dependency and environment management
Snakemake - Workflow management
Nextflow - Workflow management
GO-FAIR - FAIR principles

+ Journals

+ Societies, Foundations

DFG (Deutsche Forschungsgemeinschaft)
BMBF (Bundesministerium für Bildung, Wissenschaft, Forschung und Technologie)
Deutsche Krebshilfe
Wilhelm-Sander-Stiftung
HFSP (Human Frontier Science Program)
KoWi (Koordinierungsstelle EG der Wissenschaftsorganisationen)

EMDS (European Macrophage & Dendritic Cell Society)
DGfI (Deutsche Gesellschaft für Immunologie)
GBM (Gesellschaft für Biochemie und Molekularbiologie)
EMBO
Max-Planck-Gesellschaft
Helmholtz-Gesellschaft
Leibniz-Gemeinschaft
Alexander von Humboldt Stiftung
Leopoldina (Deutsche Akademie der Naturforscher)

+ Companies

+ Local

Michael Rehli • Dept. Internal Medicine III • University Hospital
F.-J.-Strauss Allee 11 • 93053 Regensburg • Germany

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