Detailed information for motif19

P-value:1e-60
ln P-value:-1.394e+02
Information content per bp:1.625
Number of target sequences with motif:574.0
Percentage of target sequences with motif:3.44%
Number of background sequences with motif:530.3
Percentage of background sequences with motif:  1.60%
Average position of motif in targets:266.0 +/- 199.2bp
Average position of motif in background:218.9 +/- 126.3bp
Strand bias (log2 ratio + to - strand density):-0.1
Multiplicity (# of sites on avg that occur together):  1.04
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

RFX3_f1_HM09

Match rank:  1
Score:0.92
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCATGGTAAC
GGTTGCCATGGTAA-
  

RFX1..5_RFXANK_RFXAP.p2.SwissRegulon.nucfreq

Match rank:  2
Score:0.91
Offset:-2
Orientation:reverse strand
Alignment:--GTTGCCATGGTAAC--
CNGTTGCCATGGCGACNG
  

RFX(HTH)/K562-RFX3-ChIP-Seq/Homer

Match rank:  3
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--GTTGCCATGGTAAC
CGGTTGCCATGGCAAC
  

X-box(HTH)/NPC-H3K4me1-ChIP-Seq/Homer

Match rank:  4
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCATGGTAAC
GGTTGCCATGGCAA-
  

Rfx1(HTH)/NPC-Rfx1-ChIP-Seq/Homer

Match rank:  5
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCATGGTAAC
NGTTGCCATGGCAA-