Detailed information for motif2

P-value:1e-16
ln P-value:-3.717e+01
Information content per bp:1.885
Number of target sequences with motif:6.0
Percentage of target sequences with motif:3.97%
Number of background sequences with motif:2.0
Percentage of background sequences with motif:  0.00%
Average position of motif in targets:149.2 +/- 47.7bp
Average position of motif in background:176.9 +/- 102.4bp
Strand bias (log2 ratio + to - strand density):1.0
Multiplicity (# of sites on avg that occur together):  1.00
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

SRF.p3.SwissRegulon.nucfreq

Match rank:  1
Score:0.71
Offset:1
Orientation:forward strand
Alignment:KKTMCATAAAAGGM
-GCCCAAATAAGG-
  

CDX1_f1_HM09

Match rank:  2
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:KKTMCATAAAAGGM
---NCATAAAT---
  

Hoxd9_homeodomain_DBD_DBD_CCCATAAAN_monomeric

Match rank:  3
Score:0.70
Offset:2
Orientation:forward strand
Alignment:KKTMCATAAAAGGM
--CCCATAAAA---
  

SRF_do_HM09

Match rank:  4
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-KKTMCATAAAAGGM
ATGCCCATATATGGN
  

TBP.p2.SwissRegulon.nucfreq

Match rank:  5
Score:0.70
Offset:3
Orientation:forward strand
Alignment:KKTMCATAAAAGGM----
---CTATAAAAGGNNNGG