Detailed information for motif4

P-value:1e-22
ln P-value:-5.097e+01
Information content per bp:1.735
Number of target sequences with motif:42.0
Percentage of target sequences with motif:9.63%
Number of background sequences with motif:647.4
Percentage of background sequences with motif:  1.34%
Average position of motif in targets:228.5 +/- 70.2bp
Average position of motif in background:199.2 +/- 113.9bp
Strand bias (log2 ratio + to - strand density):0.5
Multiplicity (# of sites on avg that occur together):  1.19
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

RFX3_f1_HM09

Match rank:  1
Score:0.91
Offset:0
Orientation:forward strand
Alignment:WGTTKCCATGG---
GGTTGCCATGGTAA
  

ENCODE UW.Motif.0018

Match rank:  2
Score:0.91
Offset:1
Orientation:reverse strand
Alignment:WGTTKCCATGG
-GTTNCCANGG
  

Rfx1(HTH)/NPC-Rfx1-ChIP-Seq/Homer

Match rank:  3
Score:0.88
Offset:0
Orientation:forward strand
Alignment:WGTTKCCATGG---
NGTTGCCATGGCAA
  

X-box(HTH)/NPC-H3K4me1-ChIP-Seq/Homer

Match rank:  4
Score:0.88
Offset:0
Orientation:forward strand
Alignment:WGTTKCCATGG---
GGTTGCCATGGCAA
  

RFX1..5_RFXANK_RFXAP.p2.SwissRegulon.nucfreq

Match rank:  5
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-WGTTKCCATGG------
CNGTTGCCATGGCGACNG