Detailed information for motif2

P-value:1e-36
ln P-value:-8.392e+01
Information content per bp:1.606
Number of target sequences with motif:253.0
Percentage of target sequences with motif:48.19%
Number of background sequences with motif:11251.5
Percentage of background sequences with motif:  22.79%
Average position of motif in targets:194.9 +/- 99.7bp
Average position of motif in background:198.6 +/- 116.4bp
Strand bias (log2 ratio + to - strand density):0.4
Multiplicity (# of sites on avg that occur together):  1.26
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

PAX2.p2.SwissRegulon.nucfreq

Match rank:  1
Score:0.87
Offset:-1
Orientation:reverse strand
Alignment:-CGTGACTA
NCGTGACN-
  

MA0067.1_Pax2

Match rank:  2
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-CGTGACTA
NCGTGACN-
  

MAFG_si_HM09

Match rank:  3
Score:0.82
Offset:0
Orientation:forward strand
Alignment:CGTGACTA
CATGACT-
  

PAX2_si_HM09

Match rank:  4
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-CGTGACTA
GCATGAC--
  

MA0272.1_ARG81

Match rank:  5
Score:0.77
Offset:1
Orientation:forward strand
Alignment:CGTGACTA-
-GTGACTCT