Detailed information for motif6

P-value:1e-26
ln P-value:-6.077e+01
Information content per bp:1.793
Number of target sequences with motif:476.0
Percentage of target sequences with motif:39.60%
Number of background sequences with motif:12340.3
Percentage of background sequences with motif:  25.44%
Average position of motif in targets:203.7 +/- 110.7bp
Average position of motif in background:200.3 +/- 118.5bp
Strand bias (log2 ratio + to - strand density):0.2
Multiplicity (# of sites on avg that occur together):  1.20
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

PAX2.p2.SwissRegulon.nucfreq

Match rank:  1
Score:0.82
Offset:0
Orientation:reverse strand
Alignment:GCGTGACT
NCGTGACN
  

MA0067.1_Pax2

Match rank:  2
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:GCGTGACT
NCGTGACN
  

PAX2_si_HM09

Match rank:  3
Score:0.79
Offset:0
Orientation:forward strand
Alignment:GCGTGACT
GCATGAC-
  

MA0006.1_Arnt::Ahr

Match rank:  4
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-GCGTGACT
TGCGTG---
  

AHR_ARNT_ARNT2.p2.SwissRegulon.nucfreq

Match rank:  5
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-GCGTGACT
TGCGTG---