Detailed information for motif1

P-value:1e-27
ln P-value:-6.403e+01
Information content per bp:1.829
Number of target sequences with motif:55.0
Percentage of target sequences with motif:24.66%
Number of background sequences with motif:1894.0
Percentage of background sequences with motif:  3.84%
Average position of motif in targets:202.4 +/- 80.6bp
Average position of motif in background:192.4 +/- 117.2bp
Strand bias (log2 ratio + to - strand density):-0.2
Multiplicity (# of sites on avg that occur together):  1.24
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

JUN_f1_HM09

Match rank:  1
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:GTGACTCAT
NTGACTCAN
  

SMRC1_f1_HM09

Match rank:  2
Score:0.93
Offset:0
Orientation:reverse strand
Alignment:GTGACTCAT
NTGACTCAN
  

JUND_f1_HM09

Match rank:  3
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-GTGACTCAT-
GATGACTCATC
  

AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq/Homer

Match rank:  4
Score:0.93
Offset:0
Orientation:forward strand
Alignment:GTGACTCAT-
ATGACTCATC
  

FOS_FOS{B,L1}_JUN{B,D}.p2.SwissRegulon.nucfreq

Match rank:  5
Score:0.93
Offset:0
Orientation:forward strand
Alignment:GTGACTCAT
GTGAGTCA-