Detailed information for motif11

P-value:1e-17
ln P-value:-3.948e+01
Information content per bp:1.622
Number of target sequences with motif:94.0
Percentage of target sequences with motif:10.96%
Number of background sequences with motif:1967.6
Percentage of background sequences with motif:  4.03%
Average position of motif in targets:204.5 +/- 95.9bp
Average position of motif in background:201.0 +/- 118.0bp
Strand bias (log2 ratio + to - strand density):0.6
Multiplicity (# of sites on avg that occur together):  1.08
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

NFKB2_f1_HM09

Match rank:  1
Score:0.84
Offset:1
Orientation:forward strand
Alignment:CAGGGAAATTCCA
-AGGGAGATTCC-
  

NFkB-p65-Rel(RHD)/LPS-exp/Homer

Match rank:  2
Score:0.80
Offset:2
Orientation:reverse strand
Alignment:CAGGGAAATTCCA
--GGGAATTTCC-
  

TF65_f2_HM09

Match rank:  3
Score:0.80
Offset:2
Orientation:reverse strand
Alignment:CAGGGAAATTCCA
--GGGAAATTCCC
  

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq/Homer

Match rank:  4
Score:0.79
Offset:1
Orientation:forward strand
Alignment:CAGGGAAATTCCA
-NGGGGATTTCCC
  

MA0107.1_RELA

Match rank:  5
Score:0.78
Offset:3
Orientation:reverse strand
Alignment:CAGGGAAATTCCA
---GGAAATTCCC