Detailed information for motif6

P-value:1e-18
ln P-value:-4.251e+01
Information content per bp:1.631
Number of target sequences with motif:473.0
Percentage of target sequences with motif:67.48%
Number of background sequences with motif:24753.5
Percentage of background sequences with motif:  50.83%
Average position of motif in targets:203.8 +/- 113.2bp
Average position of motif in background:200.1 +/- 120.5bp
Strand bias (log2 ratio + to - strand density):-0.1
Multiplicity (# of sites on avg that occur together):  1.65
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

SMAD1..7,9.p2.SwissRegulon.nucfreq

Match rank:  1
Score:0.75
Offset:-6
Orientation:forward strand
Alignment:------CAGCCAGCY
GNNGGGCAGACAGCC
  

SMAD2_si_HM09

Match rank:  2
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:CAGCCAGCY--
CAGACNGACAC
  

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match rank:  3
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCAGCY
CCAGACAG--
  

MAFB.p2.SwissRegulon.nucfreq

Match rank:  4
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CAGCCAGCY
GCGTCAGC-
  

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match rank:  5
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCAGCY
TGAGTCAGCA