Detailed information for motif5

P-value:1e-15
ln P-value:-3.673e+01
Information content per bp:1.839
Number of target sequences with motif:71.0
Percentage of target sequences with motif:24.65%
Number of background sequences with motif:4137.8
Percentage of background sequences with motif:  8.39%
Average position of motif in targets:209.5 +/- 105.6bp
Average position of motif in background:200.5 +/- 119.1bp
Strand bias (log2 ratio + to - strand density):0.0
Multiplicity (# of sites on avg that occur together):  1.12
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

SOX5_f1_HM09

Match rank:  1
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-AACAAKAA
TAACAATA-
  

PB0072.1_Sox5_1

Match rank:  2
Score:0.82
Offset:-5
Orientation:forward strand
Alignment:-----AACAAKAA---
TTTAGAACAATAAAAT
  

PB0062.1_Sox12_1

Match rank:  3
Score:0.81
Offset:-6
Orientation:reverse strand
Alignment:------AACAAKAA
NTTNAGAACAATTA
  

HBP1_HMGB_SSRP1_UBTF.p2.SwissRegulon.nucfreq

Match rank:  4
Score:0.81
Offset:0
Orientation:reverse strand
Alignment:AACAAKAA
AACAAT--
  

PB0065.1_Sox15_1

Match rank:  5
Score:0.80
Offset:-5
Orientation:forward strand
Alignment:-----AACAAKAA----
TAGTGAACAATAGATTT