Detailed information for motif3

P-value:1e-15
ln P-value:-3.457e+01
Information content per bp:1.721
Number of target sequences with motif:35.0
Percentage of target sequences with motif:10.36%
Number of background sequences with motif:940.8
Percentage of background sequences with motif:  1.90%
Average position of motif in targets:192.3 +/- 112.1bp
Average position of motif in background:197.4 +/- 116.6bp
Strand bias (log2 ratio + to - strand density):0.4
Multiplicity (# of sites on avg that occur together):  1.03
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

NANOG{mouse}.p2.SwissRegulon.nucfreq

Match rank:  1
Score:0.71
Offset:0
Orientation:forward strand
Alignment:TGGCTCATTTSC
GGGNCCATTTCC
  

POU2F1..3.p2.SwissRegulon.nucfreq

Match rank:  2
Score:0.66
Offset:3
Orientation:forward strand
Alignment:TGGCTCATTTSC----
---CTCATTTGCATAN
  

PU.1-IRF/Bcell-PU.1-ChIP-Seq/Homer

Match rank:  3
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TGGCTCATTTSC-
-GTTTCACTTCCG
  

SMRC1_f1_HM09

Match rank:  4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TGGCTCATTTSC
NTGACTCAN----
  

JUND_f1_HM09

Match rank:  5
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--TGGCTCATTTSC
GATGACTCATC---