Detailed information for motif2

P-value:1e-19
ln P-value:-4.497e+01
Information content per bp:1.810
Number of target sequences with motif:22.0
Percentage of target sequences with motif:6.51%
Number of background sequences with motif:187.5
Percentage of background sequences with motif:  0.38%
Average position of motif in targets:178.9 +/- 93.1bp
Average position of motif in background:192.2 +/- 107.0bp
Strand bias (log2 ratio + to - strand density):-0.6
Multiplicity (# of sites on avg that occur together):  1.00
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

HXB6_f1_HM09

Match rank:  1
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--TGARTCATGCA
AATGATTGATGCA
  

HIF1b(HLH)/O785-HIF1b-ChIP-Seq(GSE34871)/Homer

Match rank:  2
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--TGARTCATGCA
DVTGASTCAB---
  

HXB8_do_HM09

Match rank:  3
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-TGARTCATGCA
TTGATTAATGC-
  

HXB7_si_HM09

Match rank:  4
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-TGARTCATGCA
TTGATTAATG--
  

Jun-AP1(bZIP)/K562-cJun-ChIP-Seq/Homer

Match rank:  5
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--TGARTCATGCA
NATGACTCATNN-