Detailed information for motif9

P-value:1e-57
ln P-value:-1.322e+02
Information content per bp:1.631
Number of target sequences with motif:181.0
Percentage of target sequences with motif:6.89%
Number of background sequences with motif:743.9
Percentage of background sequences with motif:  1.60%
Average position of motif in targets:194.4 +/- 75.9bp
Average position of motif in background:203.6 +/- 117.5bp
Strand bias (log2 ratio + to - strand density):0.1
Multiplicity (# of sites on avg that occur together):  1.05
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

RFX3_f1_HM09

Match rank:  1
Score:0.92
Offset:1
Orientation:reverse strand
Alignment:RTCACCATGGCAAC-
-TTACCATGGCAACN
  

RFX1..5_RFXANK_RFXAP.p2.SwissRegulon.nucfreq

Match rank:  2
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--RTCACCATGGCAAC--
CNGTCGCCATGGCAACNG
  

Rfx1(HTH)/NPC-Rfx1-ChIP-Seq/Homer

Match rank:  3
Score:0.90
Offset:1
Orientation:reverse strand
Alignment:RTCACCATGGCAAC-
-TTGCCATGGCAACN
  

X-box(HTH)/NPC-H3K4me1-ChIP-Seq/Homer

Match rank:  4
Score:0.89
Offset:1
Orientation:reverse strand
Alignment:RTCACCATGGCAAC-
-TTGCCATGGCAACC
  

RFX(HTH)/K562-RFX3-ChIP-Seq/Homer

Match rank:  5
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:RTCACCATGGCAAC--
GTTGCCATGGCAACCG