Detailed information for motif27

P-value:1e-40
ln P-value:-9.292e+01
Information content per bp:1.897
Number of target sequences with motif:1349.0
Percentage of target sequences with motif:19.36%
Number of background sequences with motif:5804.4
Percentage of background sequences with motif:  13.57%
Average position of motif in targets:192.1 +/- 109.1bp
Average position of motif in background:200.1 +/- 119.1bp
Strand bias (log2 ratio + to - strand density):-0.0
Multiplicity (# of sites on avg that occur together):  1.06
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

HIC1_si_HM09

Match rank:  1
Score:0.93
Offset:-1
Orientation:forward strand
Alignment:-GGTTGCC-
GGGTTGCCC
  

MA0365.1_RFX1

Match rank:  2
Score:0.83
Offset:0
Orientation:forward strand
Alignment:GGTTGCC-
GGTTGCCA
  

RFX1_f1_HM09

Match rank:  3
Score:0.74
Offset:1
Orientation:forward strand
Alignment:GGTTGCC------
-GTTGCCAGGGAA
  

MA0133.1_BRCA1

Match rank:  4
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-GGTTGCC
GTGTTGN-
  

RFX2_f1_HM09

Match rank:  5
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GGTTGCC------
TGTTGCTAGGGAA