Detailed information for motif13

P-value:1e-22
ln P-value:-5.202e+01
Information content per bp:1.559
Number of target sequences with motif:816.0
Percentage of target sequences with motif:46.13%
Number of background sequences with motif:16628.1
Percentage of background sequences with motif:  34.69%
Average position of motif in targets:203.9 +/- 110.0bp
Average position of motif in background:200.7 +/- 117.3bp
Strand bias (log2 ratio + to - strand density):-0.0
Multiplicity (# of sites on avg that occur together):  1.37
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

SMAD1..7,9.p2.SwissRegulon.nucfreq

Match rank:  1
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GCAGGCTGCCT---
GGCTGTCTGCCCNNC
  

Tlx?/NPC-H3K4me1-ChIP-Seq/Homer

Match rank:  2
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GCAGGCTGCCT
CTGGCAGNCTGCCA
  

MA0340.1_MOT3

Match rank:  3
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:GCAGGCTGCCT-
------TACCTN
  

HIC1_si_HM09

Match rank:  4
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GCAGGCTGCCT
--GGGTTGCCC
  

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match rank:  5
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GCAGGCTGCCT
-TWGTCTGV--