Detailed information for motif4

P-value:1e-15
ln P-value:-3.674e+01
Information content per bp:1.721
Number of target sequences with motif:34.0
Percentage of target sequences with motif:11.07%
Number of background sequences with motif:897.7
Percentage of background sequences with motif:  1.83%
Average position of motif in targets:186.2 +/- 93.7bp
Average position of motif in background:197.3 +/- 120.5bp
Strand bias (log2 ratio + to - strand density):0.1
Multiplicity (# of sites on avg that occur together):  1.07
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match rank:  1
Score:0.71
Offset:4
Orientation:reverse strand
Alignment:TGAMTCAGACAG
----CCAGACAG
  

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match rank:  2
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:TGAMTCAGACAG--
----CCAGACRSVB
  

PB0060.1_Smad3_1

Match rank:  3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TGAMTCAGACAG----
CAAATCCAGACATCACA
  

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match rank:  4
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:TGAMTCAGACAG
----BCAGACWA
  

SMAD4_si_HM09

Match rank:  5
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:TGAMTCAGACAG
--GGNCAGACA-