Detailed information for motif13

P-value:1e-33
ln P-value:-7.622e+01
Information content per bp:1.688
Number of target sequences with motif:82.0
Percentage of target sequences with motif:4.34%
Number of background sequences with motif:380.1
Percentage of background sequences with motif:  0.80%
Average position of motif in targets:180.9 +/- 77.2bp
Average position of motif in background:199.7 +/- 113.0bp
Strand bias (log2 ratio + to - strand density):0.1
Multiplicity (# of sites on avg that occur together):  1.01
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

RFX1..5_RFXANK_RFXAP.p2.SwissRegulon.nucfreq

Match rank:  1
Score:0.89
Offset:-2
Orientation:forward strand
Alignment:--GTCACCATAGCAAC--
CNGTCGCCATGGCAACNG
  

RFX(HTH)/K562-RFX3-ChIP-Seq/Homer

Match rank:  2
Score:0.85
Offset:0
Orientation:reverse strand
Alignment:GTCACCATAGCAAC--
GTTGCCATGGCAACCG
  

RFX3_f1_HM09

Match rank:  3
Score:0.84
Offset:1
Orientation:reverse strand
Alignment:GTCACCATAGCAAC-
-TTACCATGGCAACN
  

Rfx1(HTH)/NPC-Rfx1-ChIP-Seq/Homer

Match rank:  4
Score:0.82
Offset:1
Orientation:reverse strand
Alignment:GTCACCATAGCAAC-
-TTGCCATGGCAACN
  

X-box(HTH)/NPC-H3K4me1-ChIP-Seq/Homer

Match rank:  5
Score:0.80
Offset:1
Orientation:reverse strand
Alignment:GTCACCATAGCAAC-
-TTGCCATGGCAACC