Detailed information for motif42

P-value:1e-16
ln P-value:-3.799e+01
Information content per bp:1.757
Number of target sequences with motif:164.0
Percentage of target sequences with motif:5.94%
Number of background sequences with motif:1358.8
Percentage of background sequences with motif:  2.89%
Average position of motif in targets:197.9 +/- 103.0bp
Average position of motif in background:194.8 +/- 112.9bp
Strand bias (log2 ratio + to - strand density):0.0
Multiplicity (# of sites on avg that occur together):  1.03
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match rank:  1
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--CTAGCAGCAG
SCCTAGCAACAG
  

SCL/HPC7-Scl-ChIP-Seq/Homer

Match rank:  2
Score:0.72
Offset:2
Orientation:forward strand
Alignment:CTAGCAGCAG
--ANCAGCTG
  

MyoD(HLH)/Myotube-MyoD-ChIP-Seq/Homer

Match rank:  3
Score:0.70
Offset:2
Orientation:forward strand
Alignment:CTAGCAGCAG----
--AGCAGCTGCTNN
  

PB0056.1_Rfxdc2_1

Match rank:  4
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----CTAGCAGCAG-
CCGCATAGCAACGGA
  

PB0003.1_Ascl2_1

Match rank:  5
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CTAGCAGCAG-----
NNNNAGCAGCTGCTGAN