Detailed information for motif41

P-value:1e-17
ln P-value:-3.927e+01
Information content per bp:1.821
Number of target sequences with motif:200.0
Percentage of target sequences with motif:7.24%
Number of background sequences with motif:1770.9
Percentage of background sequences with motif:  3.77%
Average position of motif in targets:197.0 +/- 106.8bp
Average position of motif in background:195.8 +/- 115.4bp
Strand bias (log2 ratio + to - strand density):-0.3
Multiplicity (# of sites on avg that occur together):  1.05
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match rank:  1
Score:0.78
Offset:-3
Orientation:reverse strand
Alignment:---TGTGGTCAGA
NNHTGTGGTTWN-
  

PEBB_f1_HM09

Match rank:  2
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--TGTGGTCAGA
TCTGTGGTTTG-
  

RUNX1_f1_HM09

Match rank:  3
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--TGTGGTCAGA
TTTGTGGTTA--
  

RUNX(Runt)/HPC7-Runx1-ChIP-Seq/Homer

Match rank:  4
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-TGTGGTCAGA
CTGTGGTTTN-
  

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq/Homer

Match rank:  5
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--TGTGGTCAGA
GCTGTGGTTT--