Detailed information for motif25

P-value:1e-20
ln P-value:-4.813e+01
Information content per bp:1.819
Number of target sequences with motif:142.0
Percentage of target sequences with motif:5.14%
Number of background sequences with motif:977.6
Percentage of background sequences with motif:  2.08%
Average position of motif in targets:197.6 +/- 100.3bp
Average position of motif in background:193.8 +/- 114.9bp
Strand bias (log2 ratio + to - strand density):-0.1
Multiplicity (# of sites on avg that occur together):  1.05
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

PB0055.1_Rfx4_1

Match rank:  1
Score:0.93
Offset:-3
Orientation:reverse strand
Alignment:---GTTGCTAAG---
NNCGTTGCTATGGNN
  

PB0056.1_Rfxdc2_1

Match rank:  2
Score:0.92
Offset:-3
Orientation:reverse strand
Alignment:---GTTGCTAAG---
NCCGTTGCTANGNGN
  

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match rank:  3
Score:0.91
Offset:-2
Orientation:reverse strand
Alignment:--GTTGCTAAG-
CTGTTGCTAGGS
  

PB0054.1_Rfx3_1

Match rank:  4
Score:0.91
Offset:-7
Orientation:reverse strand
Alignment:-------GTTGCTAAG-------
NTNNNNNGTTGCTANGGNNCANA
  

MA0365.1_RFX1

Match rank:  5
Score:0.88
Offset:-1
Orientation:forward strand
Alignment:-GTTGCTAAG
GGTTGCCA--