LoGo

Known motif enrichment results for CGI CAGE clusters overlapping annotated promoters

Total target sequences = 15842
Total background sequences = 32507

Rank
Motif
Name
P-value
q-value
(Benjamini)
Enrichment
Motif File
PDF
1
Sp1(Zf)/Promoter/Homer1e-3320.00006310.0 (39.83%) targets
8334.9 (25.64%) backgr.
motif file (matrix) pdf
2
NFY(CCAAT)/Promoter/Homer1e-2490.00004187.0 (26.43%) targets
5165.4 (15.89%) backgr.
motif file (matrix) pdf
3
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer1e-2060.00005723.0 (36.13%) targets
8165.7 (25.12%) backgr.
motif file (matrix) pdf
4
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer1e-2010.00005831.0 (36.81%) targets
8404.7 (25.86%) backgr.
motif file (matrix) pdf
5
ETS(ETS)/Promoter/Homer1e-1740.00003436.0 (21.69%) targets
4378.6 (13.47%) backgr.
motif file (matrix) pdf
6
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq/Homer1e-1730.00005124.0 (32.34%) targets
7345.3 (22.60%) backgr.
motif file (matrix) pdf
7
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer1e-1610.00007026.0 (44.35%) targets
11037.4 (33.96%) backgr.
motif file (matrix) pdf
8
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq/Homer1e-1360.00005419.0 (34.21%) targets
8224.0 (25.30%) backgr.
motif file (matrix) pdf
9
NRF1/Promoter/Homer1e-1280.00002850.0 (17.99%) targets
3716.2 (11.43%) backgr.
motif file (matrix) pdf
10
NRF1(NRF)/MCF7-NRF1-ChIP-Seq/Homer1e-1250.00002983.0 (18.83%) targets
3965.9 (12.20%) backgr.
motif file (matrix) pdf
11
GFY-Staf/Promoters/Homer1e-1140.0000914.0 (5.77%) targets
805.6 (2.48%) backgr.
motif file (matrix) pdf
12
YY1(Zf)/Promoter/Homer1e-1060.00001106.0 (6.98%) targets
1099.2 (3.38%) backgr.
motif file (matrix) pdf
13
ETV1(ETS)/GIST48-ETV1-ChIP-Seq/Homer1e-1020.00006825.0 (43.08%) targets
11314.6 (34.81%) backgr.
motif file (matrix) pdf
14
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq/Homer1e-970.00005386.0 (34.00%) targets
8596.3 (26.45%) backgr.
motif file (matrix) pdf
15
GFY(?)/Promoter/Homer1e-960.0000897.0 (5.66%) targets
848.5 (2.61%) backgr.
motif file (matrix) pdf
16
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer1e-870.00006074.0 (38.34%) targets
10048.9 (30.91%) backgr.
motif file (matrix) pdf
17
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer1e-800.00002287.0 (14.44%) targets
3147.7 (9.68%) backgr.
motif file (matrix) pdf
18
CRE(bZIP)/Promoter/Homer1e-780.00001904.0 (12.02%) targets
2512.6 (7.73%) backgr.
motif file (matrix) pdf
19
Klf4(Zf)/mES-Klf4-ChIP-Seq/Homer1e-770.00003342.0 (21.10%) targets
5037.3 (15.50%) backgr.
motif file (matrix) pdf
20
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer1e-740.000010993.0 (69.39%) targets
20299.3 (62.45%) backgr.
motif file (matrix) pdf
21
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq/Homer1e-690.00003067.0 (19.36%) targets
4620.2 (14.21%) backgr.
motif file (matrix) pdf
22
TATA-Box(TBP)/Promoter/Homer1e-630.00002959.0 (18.68%) targets
4497.1 (13.83%) backgr.
motif file (matrix) pdf
23
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer1e-620.00005959.0 (37.62%) targets
10185.2 (31.33%) backgr.
motif file (matrix) pdf
24
ERG(ETS)/VCaP-ERG-ChIP-Seq/Homer1e-530.00006431.0 (40.59%) targets
11268.4 (34.67%) backgr.
motif file (matrix) pdf
25
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer1e-470.0000591.0 (3.73%) targets
627.1 (1.93%) backgr.
motif file (matrix) pdf
26
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer1e-460.00004540.0 (28.66%) targets
7694.2 (23.67%) backgr.
motif file (matrix) pdf
27
RFX(HTH)/K562-RFX3-ChIP-Seq/Homer1e-420.0000795.0 (5.02%) targets
967.6 (2.98%) backgr.
motif file (matrix) pdf
28
PU.1-IRF/Bcell-PU.1-ChIP-Seq/Homer1e-410.00004020.0 (25.38%) targets
6786.1 (20.88%) backgr.
motif file (matrix) pdf
29
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq/Homer1e-400.00003959.0 (24.99%) targets
6682.7 (20.56%) backgr.
motif file (matrix) pdf
30
E-box(HLH)/Promoter/Homer1e-390.0000855.0 (5.40%) targets
1085.6 (3.34%) backgr.
motif file (matrix) pdf
31
GFX(?)/Promoter/Homer1e-390.0000316.0 (1.99%) targets
279.3 (0.86%) backgr.
motif file (matrix) pdf
32
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq/Homer1e-380.0000982.0 (6.20%) targets
1303.2 (4.01%) backgr.
motif file (matrix) pdf
33
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer1e-380.00006286.0 (39.68%) targets
11281.4 (34.71%) backgr.
motif file (matrix) pdf
34
ATF3(bZIP)/K562-ATF3-ChIP-Seq/Homer1e-350.00001339.0 (8.45%) targets
1935.5 (5.95%) backgr.
motif file (matrix) pdf
35
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer1e-340.00001395.0 (8.81%) targets
2045.5 (6.29%) backgr.
motif file (matrix) pdf
36
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer1e-310.00002143.0 (13.53%) targets
3423.1 (10.53%) backgr.
motif file (matrix) pdf
37
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer1e-290.00001312.0 (8.28%) targets
1957.0 (6.02%) backgr.
motif file (matrix) pdf
38
EGR(Zf)/K562-EGR1-ChIP-Seq/Homer1e-280.00002459.0 (15.52%) targets
4054.0 (12.47%) backgr.
motif file (matrix) pdf
39
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer1e-280.00001841.0 (11.62%) targets
2917.4 (8.98%) backgr.
motif file (matrix) pdf
40
ZBTB33/GM12878-ZBTB33-ChIP-Seq/Homer1e-260.0000837.0 (5.28%) targets
1162.4 (3.58%) backgr.
motif file (matrix) pdf
41
Rfx1(HTH)/NPC-Rfx1-ChIP-Seq/Homer1e-250.00001077.0 (6.80%) targets
1594.7 (4.91%) backgr.
motif file (matrix) pdf
42
USF1(HLH)/GM12878-Usf1-ChIP-Seq/Homer1e-230.00002250.0 (14.20%) targets
3759.6 (11.57%) backgr.
motif file (matrix) pdf
43
Stat3(Stat)/mES-Stat3-ChIP-Seq/Homer1e-230.00002236.0 (14.11%) targets
3733.8 (11.49%) backgr.
motif file (matrix) pdf
44
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq/Homer1e-210.00003399.0 (21.46%) targets
5998.0 (18.45%) backgr.
motif file (matrix) pdf
45
E2F(E2F)/Cell-Cycle-Exp/Homer1e-200.0000797.0 (5.03%) targets
1161.8 (3.57%) backgr.
motif file (matrix) pdf
46
E2F1(E2F)/Hela-E2F1-ChIP-Seq/Hoemr1e-200.00003556.0 (22.45%) targets
6327.2 (19.47%) backgr.
motif file (matrix) pdf
47
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer1e-190.00001677.0 (10.59%) targets
2755.7 (8.48%) backgr.
motif file (matrix) pdf
48
X-box(HTH)/NPC-H3K4me1-ChIP-Seq/Homer1e-180.0000535.0 (3.38%) targets
729.7 (2.25%) backgr.
motif file (matrix) pdf
49
Lhx3(Homeobox)/Forebrain-p300-ChIP-Seq/Homer1e-170.00001603.0 (10.12%) targets
2658.1 (8.18%) backgr.
motif file (matrix) pdf
50
CEBP(bZIP)/CEBPb-ChIP-Seq/Homer1e-160.00001050.0 (6.63%) targets
1654.4 (5.09%) backgr.
motif file (matrix) pdf
51
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq/Homer1e-160.00001709.0 (10.79%) targets
2879.4 (8.86%) backgr.
motif file (matrix) pdf
52
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq/Homer1e-150.00001396.0 (8.81%) targets
2301.2 (7.08%) backgr.
motif file (matrix) pdf
53
BORIS(Zf)/K562-CTCFL-ChIP-Seq/Homer1e-140.00002195.0 (13.86%) targets
3827.7 (11.78%) backgr.
motif file (matrix) pdf
54
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq/Homer1e-140.0000596.0 (3.76%) targets
872.9 (2.69%) backgr.
motif file (matrix) pdf
55
CRX(Homeobox)/Retina-Crx-ChIP-Seq/Homer1e-140.00004197.0 (26.49%) targets
7729.6 (23.78%) backgr.
motif file (matrix) pdf
56
Unknown/Homeobox/Limb-p300-ChIP-Seq/Homer1e-140.00001031.0 (6.51%) targets
1652.1 (5.08%) backgr.
motif file (matrix) pdf
57
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer1e-130.00001158.0 (7.31%) targets
1901.4 (5.85%) backgr.
motif file (matrix) pdf
58
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq/Homer1e-130.0000436.0 (2.75%) targets
613.9 (1.89%) backgr.
motif file (matrix) pdf
59
CEBP:AP1/ThioMac-CEBPb-ChIP-Seq/Homer1e-130.00001144.0 (7.22%) targets
1886.8 (5.80%) backgr.
motif file (matrix) pdf
60
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq/Homer1e-120.0000624.0 (3.94%) targets
947.0 (2.91%) backgr.
motif file (matrix) pdf
61
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer1e-120.0000295.0 (1.86%) targets
387.5 (1.19%) backgr.
motif file (matrix) pdf
62
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq/Homer1e-110.00001810.0 (11.43%) targets
3170.2 (9.75%) backgr.
motif file (matrix) pdf
63
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq/Homer1e-110.0000731.0 (4.61%) targets
1162.3 (3.58%) backgr.
motif file (matrix) pdf
64
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq/Homer1e-100.0000902.0 (5.69%) targets
1477.9 (4.55%) backgr.
motif file (matrix) pdf
65
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer1e-100.0000514.0 (3.24%) targets
780.9 (2.40%) backgr.
motif file (matrix) pdf
66
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq/Homer1e-100.0000695.0 (4.39%) targets
1106.3 (3.40%) backgr.
motif file (matrix) pdf
67
STAT4(Stat)/CD4-Stat4-ChIP-Seq/Homer1e-100.00002205.0 (13.92%) targets
3966.2 (12.20%) backgr.
motif file (matrix) pdf
68
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq/Homer1e-90.0000766.0 (4.84%) targets
1244.5 (3.83%) backgr.
motif file (matrix) pdf
69
CTCF(Zf)/CD4+-CTCF-ChIP-Seq/Homer1e-90.0000809.0 (5.11%) targets
1339.6 (4.12%) backgr.
motif file (matrix) pdf
70
Stat3+il23(Stat)/CD4-Stat3-ChIP-Seq/Homer1e-80.00002216.0 (13.99%) targets
4034.0 (12.41%) backgr.
motif file (matrix) pdf
71
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer1e-80.00001025.0 (6.47%) targets
1752.1 (5.39%) backgr.
motif file (matrix) pdf
72
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer1e-80.0000144.0 (0.91%) targets
176.7 (0.54%) backgr.
motif file (matrix) pdf
73
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer1e-70.00007346.0 (46.37%) targets
14355.1 (44.16%) backgr.
motif file (matrix) pdf
74
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer1e-70.0000562.0 (3.55%) targets
907.5 (2.79%) backgr.
motif file (matrix) pdf
75
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq/Homer1e-60.0000808.0 (5.10%) targets
1379.9 (4.25%) backgr.
motif file (matrix) pdf
76
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer1e-60.00001360.0 (8.58%) targets
2434.4 (7.49%) backgr.
motif file (matrix) pdf
77
STAT5(Stat)/mCD4+-Stat5a|b-ChIP-Seq/Homer1e-60.0000758.0 (4.78%) targets
1290.2 (3.97%) backgr.
motif file (matrix) pdf
78
Hoxc9/Ainv15-Hoxc9-ChIP-Seq/Homer1e-60.0000638.0 (4.03%) targets
1068.9 (3.29%) backgr.
motif file (matrix) pdf
79
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq/Homer1e-60.00001728.0 (10.91%) targets
3157.2 (9.71%) backgr.
motif file (matrix) pdf
80
CHR/Cell-Cycle-Exp/Homer1e-60.00001019.0 (6.43%) targets
1795.6 (5.52%) backgr.
motif file (matrix) pdf
81
ISRE(IRF)/ThioMac-LPS-exp/HOMER1e-60.0000176.0 (1.11%) targets
244.5 (0.75%) backgr.
motif file (matrix) pdf
82
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer1e-60.00001919.0 (12.11%) targets
3543.2 (10.90%) backgr.
motif file (matrix) pdf
83
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq/Homer1e-60.00001109.0 (7.00%) targets
1972.2 (6.07%) backgr.
motif file (matrix) pdf
84
HOXA9/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer1e-50.0000835.0 (5.27%) targets
1467.0 (4.51%) backgr.
motif file (matrix) pdf
85
Nanog(Homeobox)/mES-Nanog-ChIP-Seq/Homer1e-50.00007882.0 (49.75%) targets
15605.0 (48.01%) backgr.
motif file (matrix) pdf
86
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq/Homer/1e-50.0000610.0 (3.85%) targets
1046.8 (3.22%) backgr.
motif file (matrix) pdf
87
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer1e-50.0000643.0 (4.06%) targets
1112.3 (3.42%) backgr.
motif file (matrix) pdf
88
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq/Homer1e-40.00001385.0 (8.74%) targets
2541.4 (7.82%) backgr.
motif file (matrix) pdf
89
CArG(MADS)/PUER-Srf-ChIP-Seq/Homer1e-40.0000631.0 (3.98%) targets
1091.6 (3.36%) backgr.
motif file (matrix) pdf
90
Max(HLH)/K562-Max-ChIP-Seq/Homer1e-40.00002282.0 (14.40%) targets
4313.6 (13.27%) backgr.
motif file (matrix) pdf
91
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq/Homer1e-40.00013878.0 (24.48%) targets
7514.3 (23.12%) backgr.
motif file (matrix) pdf
92
NFkB-p65-Rel(RHD)/LPS-exp/Homer1e-40.0001244.0 (1.54%) targets
383.2 (1.18%) backgr.
motif file (matrix) pdf
93
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq/Homer1e-40.0001141.0 (0.89%) targets
204.2 (0.63%) backgr.
motif file (matrix) pdf
94
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)1e-40.0001729.0 (4.60%) targets
1295.1 (3.98%) backgr.
motif file (matrix) pdf
95
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer1e-40.000287.0 (0.55%) targets
115.3 (0.35%) backgr.
motif file (matrix) pdf
96
HIF2a(HLH)/O785-HIF2a-ChIP-Seq(GSE34871)/Homer1e-30.00041842.0 (11.63%) targets
3488.9 (10.73%) backgr.
motif file (matrix) pdf
97
PRDM14(Zf)/H1-PRDM14-ChIP-Seq/Homer1e-30.0004738.0 (4.66%) targets
1327.4 (4.08%) backgr.
motif file (matrix) pdf
98
Gata1(Zf)/K562-GATA1-ChIP-Seq/Homer1e-30.0006783.0 (4.94%) targets
1420.5 (4.37%) backgr.
motif file (matrix) pdf
99
Gata2(Zf)/K562-GATA2-ChIP-Seq/Homer1e-30.0012856.0 (5.40%) targets
1572.9 (4.84%) backgr.
motif file (matrix) pdf
100
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer1e-30.0020887.0 (5.60%) targets
1640.1 (5.05%) backgr.
motif file (matrix) pdf
101
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer1e-30.0020300.0 (1.89%) targets
512.3 (1.58%) backgr.
motif file (matrix) pdf
102
Eomes(T-box)/H9-Eomes-ChIP-Seq/Homer1e-20.00285819.0 (36.73%) targets
11566.0 (35.58%) backgr.
motif file (matrix) pdf
103
n-Myc(HLH)/mES-nMyc-ChIP-Seq/Homer1e-20.00373001.0 (18.94%) targets
5865.0 (18.04%) backgr.
motif file (matrix) pdf
104
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer1e-20.00442704.0 (17.07%) targets
5273.4 (16.22%) backgr.
motif file (matrix) pdf
105
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-ChIP-Seq/Homer1e-20.0059175.0 (1.10%) targets
289.7 (0.89%) backgr.
motif file (matrix) pdf
106
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq/Homer1e-20.00711429.0 (9.02%) targets
2736.5 (8.42%) backgr.
motif file (matrix) pdf
107
RUNX(Runt)/HPC7-Runx1-ChIP-Seq/Homer1e-20.00721575.0 (9.94%) targets
3027.5 (9.31%) backgr.
motif file (matrix) pdf
108
STAT6/Macrophage-Stat6-ChIP-Seq/Homer1e-20.00921032.0 (6.51%) targets
1955.4 (6.02%) backgr.
motif file (matrix) pdf
109
IRF4(IRF)/GM12878-IRF4-ChIP-Seq/Homer1e-20.0116871.0 (5.50%) targets
1642.4 (5.05%) backgr.
motif file (matrix) pdf
110
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer1e-20.0118135.0 (0.85%) targets
221.3 (0.68%) backgr.
motif file (matrix) pdf
111
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq/Homer1e-20.01275087.0 (32.11%) targets
10139.9 (31.19%) backgr.
motif file (matrix) pdf

 
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