Detailed information for motif35

P-value:1e-39
ln P-value:-9.118e+01
Information content per bp:1.868
Number of target sequences with motif:3527.0
Percentage of target sequences with motif:22.26%
Number of background sequences with motif:5887.3
Percentage of background sequences with motif:  18.10%
Average position of motif in targets:315.9 +/- 235.3bp
Average position of motif in background:278.5 +/- 211.4bp
Strand bias (log2 ratio + to - strand density):0.0
Multiplicity (# of sites on avg that occur together):  1.11
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

MA0365.1_RFX1

Match rank:  1
Score:0.84
Offset:0
Orientation:forward strand
Alignment:CGTTGCCA
GGTTGCCA
  

ENCODE UW.Motif.0018

Match rank:  2
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:CGTTGCCA---
-GTTNCCANGG
  

PB0055.1_Rfx4_1

Match rank:  3
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--CGTTGCCA-----
NNCGTTGCTATGGNN
  

PB0056.1_Rfxdc2_1

Match rank:  4
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--CGTTGCCA-----
NCCGTTGCTANGNGN
  

RFX1_f1_HM09

Match rank:  5
Score:0.73
Offset:1
Orientation:forward strand
Alignment:CGTTGCCA-----
-GTTGCCAGGGAA