Detailed information for motif55

P-value:1e-26
ln P-value:-6.072e+01
Information content per bp:1.679
Number of target sequences with motif:847.0
Percentage of target sequences with motif:4.38%
Number of background sequences with motif:872.2
Percentage of background sequences with motif:  2.98%
Average position of motif in targets:292.7 +/- 190.6bp
Average position of motif in background:243.7 +/- 191.1bp
Strand bias (log2 ratio + to - strand density):-0.0
Multiplicity (# of sites on avg that occur together):  1.04
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

Rfx1(HTH)/NPC-Rfx1-ChIP-Seq/Homer

Match rank:  1
Score:0.97
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCATGGCAA
NGTTGCCATGGCAA
  

X-box(HTH)/NPC-H3K4me1-ChIP-Seq/Homer

Match rank:  2
Score:0.95
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCATGGCAA
GGTTGCCATGGCAA
  

RFX(HTH)/K562-RFX3-ChIP-Seq/Homer

Match rank:  3
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--GTTGCCATGGCAA-
CGGTTGCCATGGCAAC
  

RFX3_f1_HM09

Match rank:  4
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-GTTGCCATGGCAA
GGTTGCCATGGTAA
  

RFX1..5_RFXANK_RFXAP.p2.SwissRegulon.nucfreq

Match rank:  5
Score:0.89
Offset:-2
Orientation:reverse strand
Alignment:--GTTGCCATGGCAA---
CNGTTGCCATGGCGACNG