Detailed information for motif39

P-value:1e-41
ln P-value:-9.526e+01
Information content per bp:1.554
Number of target sequences with motif:1745.0
Percentage of target sequences with motif:9.03%
Number of background sequences with motif:1900.6
Percentage of background sequences with motif:  6.50%
Average position of motif in targets:318.6 +/- 246.2bp
Average position of motif in background:269.4 +/- 207.7bp
Strand bias (log2 ratio + to - strand density):-0.1
Multiplicity (# of sites on avg that occur together):  1.06
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

PH0048.1_Hoxa13

Match rank:  1
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----TTTGCGAGCGA-
ANATTTTACGAGNNNN
  

E2F(E2F)/Cell-Cycle-Exp/Homer

Match rank:  2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TTTGCGAGCGA-
TTTTCGCGCGAA
  

AHR_si_HM09

Match rank:  3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TTTGCGAGCGA
GTTGCGTGC--
  

MA0282.1_CEP3

Match rank:  4
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:TTTGCGAGCGA
TTTCCGAG---
  

PH0068.1_Hoxc13

Match rank:  5
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----TTTGCGAGCGA-
NAATTTTACGAGNTNN