Detailed information for motif38

P-value:1e-44
ln P-value:-1.020e+02
Information content per bp:1.861
Number of target sequences with motif:1259.0
Percentage of target sequences with motif:6.52%
Number of background sequences with motif:1262.9
Percentage of background sequences with motif:  4.32%
Average position of motif in targets:327.6 +/- 273.0bp
Average position of motif in background:274.4 +/- 212.4bp
Strand bias (log2 ratio + to - strand density):-0.2
Multiplicity (# of sites on avg that occur together):  1.06
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

MA0231.1_lbe

Match rank:  1
Score:0.76
Offset:0
Orientation:forward strand
Alignment:TAACGAC
TAACTA-
  

PH0076.1_Hoxd11

Match rank:  2
Score:0.72
Offset:-6
Orientation:reverse strand
Alignment:------TAACGAC----
ANNATTTTACGACNTNA
  

PH0065.1_Hoxc10

Match rank:  3
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----TAACGAC----
ANNTTTTACGACNTNN
  

PH0066.1_Hoxc11

Match rank:  4
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----TAACGAC----
NNNTTTTACGACNTTN
  

PH0047.1_Hoxa11

Match rank:  5
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----TAACGAC----
NNGTTTTACGACTTTA