Detailed information for motif1

P-value:1e-400
ln P-value:-9.228e+02
Information content per bp:1.752
Number of target sequences with motif:7749.0
Percentage of target sequences with motif:40.10%
Number of background sequences with motif:7590.3
Percentage of background sequences with motif:  25.95%
Average position of motif in targets:296.5 +/- 191.0bp
Average position of motif in background:240.8 +/- 177.3bp
Strand bias (log2 ratio + to - strand density):0.1
Multiplicity (# of sites on avg that occur together):  1.64
Motif file:file (matrix)
reverse opposite
PDF format logos:forward logo
reverse opposite

Motif logos

Forward:
Reverse:


Conservation across vertebrates

Matches to known motifs

POL003.1_GC-box

Match rank:  1
Score:0.95
Offset:-1
Orientation:forward strand
Alignment:-RGGGGCGGGGC--
AGGGGGCGGGGCTG
  

SP1_f1_HM09

Match rank:  2
Score:0.94
Offset:0
Orientation:forward strand
Alignment:RGGGGCGGGGC
GGGGGCGGGGC
  

SP1.p2.SwissRegulon.nucfreq

Match rank:  3
Score:0.94
Offset:-1
Orientation:forward strand
Alignment:-RGGGGCGGGGC--
GGGGGGCGGGGCCG
  

PB0039.1_Klf7_1

Match rank:  4
Score:0.92
Offset:-2
Orientation:reverse strand
Alignment:--RGGGGCGGGGC---
NNAGGGGCGGGGTNNA
  

SP3_f1_HM09

Match rank:  5
Score:0.89
Offset:-4
Orientation:forward strand
Alignment:----RGGGGCGGGGC-----
GGGGGGGGGCGGGGCCGGGG